430 Open source projects that are alternatives of or similar to Quagmir

A lightweight stream processing library for Go

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

piper - a distributed workflow engine

GitLab Merger Bot

Helper for dealing with secrets in kubernetes.

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

A Python framework for creating reproducible, maintainable and modular data science code.

A library to build and execute typed scientific workflows

A proposal for adding a useful pipe operator to JavaScript.

Example of how to use ElasticSearch ingest-attachment plugin using JavaScript

Neural networks training pipeline based on PyTorch

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

highly-efficient & lightweight mutation signature matrix aggregation

SciKIt-learn Pipeline in PAndas

Catalog of shared Tasks and Pipelines.

Assembling the cause of phenotypes and genotypes from NGS data

Elegant error/exception handling in Elixir, with result monads.

Prometheus spot instance exporter to monitor AWS instance termination with Hollowtrees

A guideline for building practical production-level deep learning systems to be deployed in real world applications.

A stream processing framework for high-throughput applications.

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Pipelines as Code

Easy to use library to bring Tensorflow on Apache Spark

Riscv32 CPU Project

Simple & Efficient data access for Scala and Scala.js

A build system for modular development in Salesforce, delivered as a sfdx plugin that can be implemented in any CI/CD system of choice

ETL Library for Machine Learning - data pipelines, data munging and wrangling

A package for designing compact and comprehensive capture probe sets.

A reliable, high-performance tool for building observability data pipelines.

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

A Python framework for creating reproducible, maintainable and modular data science code.

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

开源运维平台设计及开发样例、CMS、RBAC、python开发教程、管理系统设计及开发样例、jenkinsfile(pipeline)/ansible使用教程，一切想到的，想不到的，应有尽有

PySide based TACTIC client for maya, nuke, 3dsmax, houdini, etc

TypeScript/JavaScript utilities for those who don't like utilities

Opinionated full stack web app's boilerplate, ready to be deployed to AWS platform.

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Safe, Reliable, and Fast Production Deployments for Kubernetes

Old specification for Hack pipes in JavaScript. Please go to the new specification.

A cross-platform command-line tool for executing jobs in parallel

Transformers Pipeline with KoELECTRA

Pipeline for training LSA models using Scikit-Learn.

A lightweight data processing framework for Apache Spark

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Basin is a visual programming editor for building Spark and PySpark pipelines. Easily build, debug, and deploy complex ETL pipelines from your browser

🚀 A sequencing simulator

A flexible, high-performance carrier for machine learning models（『飞桨』服务化部署框架）

Fun functional programming with pipelinable functions

A simplified pipeline for ctDNA sequencing data analysis

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

蓝鲸智云标准运维(SOPS)

Jenkins X provides automated CI+CD for Kubernetes with Preview Environments on Pull Requests using Cloud Native pipelines from Tekton

Sets up a mithril.js project with webpack

Pipeline as Code with Jenkins

Cloud Pipelines Editor is a web app that allows the users to build and run Machine Learning pipelines without having to set up development environment.

🍴 Web applications made easy. Since 2011.

Catalyst.Segmentation

Robust, flexible and resource-efficient pipelines using Go and the commandline