694 Open source projects that are alternatives of or similar to Rcpi

A curated list of resources for machine learning for small-molecule drug discovery

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

An integrated negative design python library for desirable HTS/VS database design

Fingerprint recognition engine for Java that takes a pair of human fingerprint images and returns their similarity score. Supports efficient 1:N search.

The Chemistry Development Kit

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Web Interface for ChEMBL @ EMBL-EBI

Fingerprint recognition engine for .NET that takes a pair of human fingerprint images and returns their similarity score. Supports efficient 1:N search.

Python package for graph neural networks in chemistry and biology

MolMap: An Efficient Convolutional Neural Network Based Molecular Deep Learning Tool

Comprehensive toolkit for generating various numerical features of protein sequences

A curated list of Cheminformatics libraries and software.

Robust, flexible and resource-efficient pipelines using Go and the commandline

Python for chemoinformatics

3D molecular fingerprints

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

Provide R access to the NCI Genomic Data Commons portal.

Computational Analysis of Novel Drug Opportunities

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Fast motif matching in R

Assembling the cause of phenotypes and genotypes from NGS data

Stacked Denoising AutoEncoder based on TensorFlow

.NET library to access and control Anviz devices.

React rerelease of MSAViewer

GWAS summary statistics files QC tool

A computational library for learning and evaluating biological knowledge graph embeddings

exploratory and interactive microbiome analyses based on heatmaps

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

🔑 Technology-agnostic Physical Unclonable Function (PUF) hardware module for any FPGA.

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Useful bioinformatic scripts

🚦 Run Picard on BAM files and collate 90 metrics into one file.

My own tools code for NGS data analysis (Next Generation Sequencing)

A curated list of awesome bioinformatics software.

Rapid determination of appropriate reference genomes.

Genotyping of segregating mobile elements insertions

An open-access bioinformatics text

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

Unsupervised domain adaptation method for relation extraction

3D printed sculpture of a DNA molecule, showing my own genome

VirNet: A deep attention model for viral reads identification

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Mapping-Assisted Targeted-Assembly for Metagenomics

Original implementation of Calibrated Boosting-Forest

Fast and flexible ORF finder

Bystro genetic analysis (annotation, filtering, statistics)

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

A Python platform for Structural Bioinformatics

python code for calculating the WHALES (Weighted Holistic Atom Localization and Entity Shape) molecular descriptors

Read DNA sequences from colourful Microsoft Word documents

Method to optimally select samples for validation and resequencing

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

nmap service and application version detection (without nmap installation)

A sparsity aware implementation of "Alternating Direction Method of Multipliers for Non-Negative Matrix Factorization with the Beta-Divergence" (ICASSP 2014).