85 Open source projects that are alternatives of or similar to readfq

A robust model for quantitative comparison of ChIP-Seq data sets.

Estimation of pairwise distances under a probabilistic framework

Data intensive science for everyone.

C library for high-throughput sequencing data formats

Tools to process and analyze deep sequencing data.

Java utilities for Bioinformatics

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

A simplified pipeline for ctDNA sequencing data analysis

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Project metadata manager for PEPs in Python

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Method to optimally select samples for validation and resequencing

A package for designing compact and comprehensive capture probe sets.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Scalable long read self-correction and assembly polishing with multiple sequence alignment

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

A set of command line tools based on R and JavaScript.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

Fast and accurate sequence demultiplexing

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences