396 Open source projects that are alternatives of or similar to reprozip-examples

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Reproducible Data Science in Python (SciPy 2019 Tutorial)

A curated list of reproducible research case studies, projects, tutorials, and media

rrtools: Tools for Writing Reproducible Research in R

Software Papers as Software Modules: Towards a Culture of Reusable Results

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

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Function-oriented Make-like declarative workflows for R

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

Future Gadget Machine

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D

Example workflows for the drake R package

An R-focused pipeline toolkit for reproducibility and high-performance computing

A DSL for data-driven computational pipelines

Lightweight, Python library for fast and reproducible experimentation 🔬

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Curated set of transformers that make your work with steppy faster and more effective 🔭

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

🐳 Containerize R Markdown documents for continuous reproducibility

Pythonic functions for creating and enhancing Hydra applications

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

🔬 Empirical CLI

Workflow Description Language - Specification and Implementations

High Performance Computing Strategies for Boundary Value Problems

⛔ ARCHIVED ⛔

Data Analysis Workflows & Reproducibility Learning Resources

Unofficial Implementation of ECANets (CVPR 2020) for the Reproducibility Challenge 2020.

Presentation-Ready Data Summary and Analytic Result Tables

Cookbook examples for the Insight Toolkit documented with Sphinx

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Cookbook examples for the Insight Toolkit documented with Sphinx

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

Source code for the CERN Analysis Preservation portal

project page for creating a guide to reproducible research

Everware is about re-useable science, it allows people to jump right in to your research code.

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Reproducible Science: what, why, how

A minimal example data analysis project with the targets R package

Short course on the targets R package

Seamless is a framework to set up reproducible computations (and visualizations) that respond to changes in cells. Cells contain the input data as well as the source code of the computations, and all cells can be edited interactively.

creating optimal conditions for reproducibility

Deploy a BinderHub from scratch on Microsoft Azure

Coding Standards for the USC Biostats group

A set of tools for R that enhance reproducibility beyond package management

Package an R workspace and all dependencies as a Docker container

Fully reproducible, open source scientific articles in LaTeX.

Future Gadget Laboratory

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

Open solution to the Google AI Object Detection Challenge 🍁

Papers with code for single cell related papers

Simulation framework for nonsmooth dynamical systems

Python wrapper for MFEM

This is a replication of "CFD Python: 12 steps to Navier-Stokes" in Julia

Collective Knowledge web extension to browse CK repositories, visualize interactive graphs and articles, render CK-based websites, implement simple web services with JSON API (for example to crowdsource experiments or unify access to DNN). Demos of interactive articles, graphs and crowdsourced experiments:

🐶 🕵️ Great Dane turned Python environment detective