ItkInsight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Stars: ✭ 801 (+1568.75%)
Mutual labels: reproducible-research, open-science, medical-imaging, scientific-computing, image-analysis
ItkexamplesCookbook examples for the Insight Toolkit documented with Sphinx
Stars: ✭ 38 (-20.83%)
Mutual labels: reproducible-research, open-science, medical-imaging, scientific-computing, image-analysis
ItkwidgetsInteractive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D
Stars: ✭ 338 (+604.17%)
Mutual labels: reproducible-research, open-science, scientific-computing, image-analysis
OtbGithub mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb
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Mutual labels: reproducible-research, open-science
AvogadrolibsAvogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Stars: ✭ 164 (+241.67%)
Mutual labels: open-science, scientific-computing
reprozip-examplesExamples and demos for ReproZip
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Mutual labels: reproducible-research, scientific-computing
Segment OpenSegment Source Distribution
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Mutual labels: medical-imaging, image-analysis
ProjectweekWebsite for NA-MIC Project Weeks
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Mutual labels: reproducible-research, medical-imaging
Openml RR package to interface with OpenML
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Mutual labels: reproducible-research, open-science
FmaFMA: A Dataset For Music Analysis
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Mutual labels: reproducible-research, open-science
Grand Challenge.orgA platform for end-to-end development of machine learning solutions in biomedical imaging
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Mutual labels: reproducible-research, medical-imaging
OsfrR interface to the Open Science Framework (OSF)
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Mutual labels: reproducible-research, open-science
SimpegSimulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
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Mutual labels: open-science, scientific-computing
PyimsegmImage segmentation - general superpixel segmentation & center detection & region growing
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Mutual labels: medical-imaging, image-analysis
ViewersThe OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve
and load images from most sources and formats; render sets in 2D, 3D, and
reconstructed representations; allows for the manipulation, annotation, and
serialization of observations; supports internationalization, OpenID Connect,
offline use, hotkeys, and many more features.
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Mutual labels: medical-imaging, image-analysis
cucimNo description or website provided.
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Mutual labels: medical-imaging, image-analysis
BoneJ2Plugins for bone image analysis
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Mutual labels: scientific-computing, image-analysis
Awesome Open Science Softwareawesome open list of pointers about open science for software and computational science
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Mutual labels: reproducible-research, open-science
ReprozipReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
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Mutual labels: reproducible-research, scientific-computing
openscienceEmpirical Software Engineering journal (EMSE) open science and reproducible research initiative
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Mutual labels: reproducible-research, open-science