205 Open source projects that are alternatives of or similar to researchcompendium

Short course on reproducible science: what, why, how

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ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

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rrtools: Tools for Writing Reproducible Research in R

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

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Function-oriented Make-like declarative workflows for R

Reproducible Science: what, why, how

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Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

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An R-focused pipeline toolkit for reproducibility and high-performance computing

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

A DSL for data-driven computational pipelines

Curated set of transformers that make your work with steppy faster and more effective 🔭

Deploy a BinderHub from scratch on Microsoft Azure

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project page for creating a guide to reproducible research

Workflow Description Language - Specification and Implementations

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Lightweight, Python library for fast and reproducible experimentation 🔬

Everware is about re-useable science, it allows people to jump right in to your research code.

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

🐳 Containerize R Markdown documents for continuous reproducibility

A set of tools for R that enhance reproducibility beyond package management

creating optimal conditions for reproducibility

Short course on the targets R package

Fully reproducible, open source scientific articles in LaTeX.

Presentation-Ready Data Summary and Analytic Result Tables

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

Example workflows for the drake R package

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Source code for the CERN Analysis Preservation portal

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

Future Gadget Laboratory

Pythonic functions for creating and enhancing Hydra applications

Open solution to the Google AI Object Detection Challenge 🍁

PyTorch Lightning + Hydra. A very user-friendly template for rapid and reproducible ML experimentation with best practices. ⚡🔥⚡

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

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Cross-disease comparison of case-control gut microbiome studies

WRENCH: Cyberinfrastructure Simulation Workbench

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Rmarkdown templates for reproducible science

Reproducible Bayesian data analysis pipelines with targets and cmdstanr

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