201 Open source projects that are alternatives of or similar to Rrtools

Reproducible Data Science in Python (SciPy 2019 Tutorial)

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Software Papers as Software Modules: Towards a Culture of Reusable Results

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Examples and demos for ReproZip

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

A curated list of reproducible research case studies, projects, tutorials, and media

Short course on reproducible science: what, why, how

Unofficial Implementation of ECANets (CVPR 2020) for the Reproducibility Challenge 2020.

Workflow Description Language - Specification and Implementations

🔬 Empirical CLI

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Fully reproducible, open source scientific articles in LaTeX.

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

Future Gadget Machine

An R-focused pipeline toolkit for reproducibility and high-performance computing

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

Papers with code for single cell related papers

Lightweight, Python library for fast and reproducible experimentation 🔬

Curated set of transformers that make your work with steppy faster and more effective 🔭

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Presentation-Ready Data Summary and Analytic Result Tables

Short course on the targets R package

Pythonic functions for creating and enhancing Hydra applications

⛔ ARCHIVED ⛔

Data Analysis Workflows & Reproducibility Learning Resources

Future Gadget Laboratory

Coding Standards for the USC Biostats group

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

Deploy a BinderHub from scratch on Microsoft Azure

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

Reproducible Science: what, why, how

Example workflows for the drake R package

☁️ 🚀 📊 📈 Evaluating state of the art in AI

A DSL for data-driven computational pipelines

Source code for the CERN Analysis Preservation portal

project page for creating a guide to reproducible research

Everware is about re-useable science, it allows people to jump right in to your research code.

A minimal example data analysis project with the targets R package

Open solution to the Google AI Object Detection Challenge 🍁

creating optimal conditions for reproducibility

Package an R workspace and all dependencies as a Docker container

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

🐳 Containerize R Markdown documents for continuous reproducibility

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Function-oriented Make-like declarative workflows for R

A set of tools for R that enhance reproducibility beyond package management

DIME's LaTeX templates and LaTeX exercises teaching anyone new to LaTeX how to use LaTeX and how to use DIME's templates

An R package to create styled tables in multiple output formats, with a friendly, modern interface.

🐶 🕵️ Great Dane turned Python environment detective

Open solution to the Home Credit Default Risk challenge 🏡

An R Pandoc Writer: Convert arbitrary R objects into markdown

List of resources for learning R

REANA: Reusable research data analysis platform

Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb

Synchronize your working directory efficiently to a remote place without committing the changes.

Collective Knowledge framework (CK) helps to organize black-box research software as a database of reusable components and micro-services with common APIs, automation actions and extensible meta descriptions. See real-world use cases from Arm, General Motors, ACM, Raspberry Pi foundation and others:

The Organization lesson for the Reproducible Science Curriculum