ctuning-programsCollective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:
Stars: ✭ 41 (-52.33%)
Mutual labels: reproducible-research, reproducible-workflows
OAProgressionMultimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data
Stars: ✭ 58 (-32.56%)
Mutual labels: reproducible-research
CD4-csawReproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
Stars: ✭ 16 (-81.4%)
Mutual labels: reproducible-research
tibannaTibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Stars: ✭ 61 (-29.07%)
Mutual labels: cwl
cwl-tsTypescript data model for Common Workflow Language
Stars: ✭ 42 (-51.16%)
Mutual labels: cwl
publicationsIMS Machine Learning Lab publications.
Stars: ✭ 18 (-79.07%)
Mutual labels: reproducible-research
VIRTUSA bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Stars: ✭ 28 (-67.44%)
Mutual labels: cwl
emp🔬 Empirical CLI
Stars: ✭ 42 (-51.16%)
Mutual labels: reproducible-research
hotsubCommand line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
Stars: ✭ 29 (-66.28%)
Mutual labels: cwl
nonparametric-bayes📓 Non-parametric Bayesian Inference for Conservation Decisions
Stars: ✭ 39 (-54.65%)
Mutual labels: reproducible-research
researchcompendiumNOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach
Stars: ✭ 26 (-69.77%)
Mutual labels: reproducible-research
dxCompilerWDL and CWL compiler for the DNAnexus platform
Stars: ✭ 15 (-82.56%)
Mutual labels: cwl
crowdsource-experiments-using-android-devicesAndroid application to participate in experiment crowdsourcing (such as workload crowd-benchmarking and crowd-tuning) using Collective Knowledge Framework and open repositories of knowledge:
Stars: ✭ 23 (-73.26%)
Mutual labels: reproducible-research
idealInteractive Differential Expression AnaLysis - DE made accessible and reproducible
Stars: ✭ 24 (-72.09%)
Mutual labels: reproducible-research
rmdTemplatesRmarkdown templates for reproducible science
Stars: ✭ 112 (+30.23%)
Mutual labels: reproducible-research
dicyA builder for LaTeX, knitr, literate Agda, literate Haskell and Pweave that automatically builds dependencies.
Stars: ✭ 22 (-74.42%)
Mutual labels: reproducible-research
bentenA language server for Common Workflow Language
Stars: ✭ 50 (-41.86%)
Mutual labels: cwl
polyaxon-quick-startA quick start project for polyaxon
Stars: ✭ 30 (-65.12%)
Mutual labels: reproducible-research
ck-webCollective Knowledge web extension to browse CK repositories, visualize interactive graphs and articles, render CK-based websites, implement simple web services with JSON API (for example to crowdsource experiments or unify access to DNN). Demos of interactive articles, graphs and crowdsourced experiments:
Stars: ✭ 31 (-63.95%)
Mutual labels: reproducible-research
