524 Open source projects that are alternatives of or similar to showyourwork

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Future Gadget Machine

Reproducible Data Science in Python (SciPy 2019 Tutorial)

A curated list of reproducible research case studies, projects, tutorials, and media

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

WRENCH: Cyberinfrastructure Simulation Workbench

Source code for the CERN Analysis Preservation portal

🐳 Containerize R Markdown documents for continuous reproducibility

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Software Papers as Software Modules: Towards a Culture of Reusable Results

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

Everware is about re-useable science, it allows people to jump right in to your research code.

Short course on reproducible science: what, why, how

🔬 Empirical CLI

A DSL for data-driven computational pipelines

Papers with code for single cell related papers

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

pytask is a workflow management system which facilitates reproducible data analyses.

Examples and demos for ReproZip

rrtools: Tools for Writing Reproducible Research in R

Future Gadget Laboratory

Package an R workspace and all dependencies as a Docker container

Alpine-based multistage-build version of terraform-docs and terraform-docs-replace in multiple versions to be used for CI and other reproducible automations

Public scenarios to crowdsource experiments (such as DNN crowd-benchmarking and crowd-tuning) using Collective Knowledge Framework across diverse mobile devices provided by volunteers. Results are continuously aggregated at the open repository of knowledge:

Fully Configured Example of CI/CD For Notebooks On Top Of GCP

Just to learn how to use travis-ci in a java project!

Platform for integrating genomic analysis with Jupyter Notebooks.

Software AG DevOps library to support assets CI (continuous integration) with webMethods 9.x and 10.0. Work together with https://github.com/SoftwareAG/webmethods-sample-project-layout

⤴️ Steep Workflow Management System – Run scientific workflows in the Cloud

A Python library for the Buildkite API

A framework for automating penetration testing using a plugin based architecture

Simple Kubernetes raw manifests deployment tool

The ready to use Continuous Integration platform

Data Analysis Workflows & Reproducibility Learning Resources

The GenePattern Server web application

All-in-one Concourse VM with S3-compatible storage and Vault secret manager

Manager for multi-container computing environments

Assertion and unit test framework for LabVIEW

The Cloud SDK pipeline uses the Cloud SDK continuous delivery server for building, checking, and deploying extension applications. Projects based on the SAP Cloud SDK archetype will automatically use this pipeline.

Github action to retrieve all (added, copied, modified, deleted, renamed, type changed, unmerged, unknown) files and directories.

Alpine-based multistage-build version of Ansible for reproducible usage in CI

Overview of different methods to build LaTeX with GitHub Actions or Travis-CI (idea by @jackolney but completely rewritten by @PHPirates and contributors).

📺 plays various stream sites on kodi using youtube-dl

A setup script to generate ITK Python Wheels

Bash script for continuous integration of Arduino projects

Code for "Depth Uncertainty in Neural Networks" (https://arxiv.org/abs/2006.08437)

Git Anti-Virus Scan Action - Detect trojans, viruses, malware & other malicious threats.

Terraform Module for a distributed concourse cluster on AWS

Open Plant Pathology website

Tool to create ABI reports from ELF binaries in packaging

Faster CI/CD for multi-artifact projects

A GitHub Action that makes it easy to use Great Expectations to validate your data pipelines in your CI workflows.

An example of using CI for Haxe projects.

GitHub Actions action that checks whether Arduino sketches compile and produces a report of data from the compilations

PHP Static Analysis in Github Actions.

boots is a .NET global tool for "bootstrapping" vsix & pkg files. Just "boots https://url/to/your/package"!

Docker based continuous integration, continuous deployment and code lint review system for BitBucket