All Projects → Slivar → Similar Projects or Alternatives

273 Open source projects that are alternatives of or similar to Slivar

Bgt
Flexible genotype query among 30,000+ samples whole-genome
Stars: ✭ 72 (-34.55%)
Mutual labels:  genomics
fermikit
De novo assembly based variant calling pipeline for Illumina short reads
Stars: ✭ 98 (-10.91%)
Mutual labels:  genomics
Sixess
🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
Stars: ✭ 14 (-87.27%)
Mutual labels:  genomics
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Stars: ✭ 25 (-77.27%)
Mutual labels:  genomics
Genomicsqlite
Genomics Extension for SQLite
Stars: ✭ 90 (-18.18%)
Mutual labels:  genomics
coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
Stars: ✭ 42 (-61.82%)
Mutual labels:  genomics
Fermi2
Stars: ✭ 23 (-79.09%)
Mutual labels:  genomics
CAMSA
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Stars: ✭ 18 (-83.64%)
Mutual labels:  genomics
Bluegenes
A friendly next-generation interface for Genomic data discovery powered by InterMine
Stars: ✭ 66 (-40%)
Mutual labels:  genomics
switchde
Inference of switch-like differential expression along single-cell trajectories
Stars: ✭ 19 (-82.73%)
Mutual labels:  genomics
Galaxy
Data intensive science for everyone.
Stars: ✭ 812 (+638.18%)
Mutual labels:  genomics
Ontologies
Home of the Genomic Feature and Variation Ontology (GFVO)
Stars: ✭ 16 (-85.45%)
Mutual labels:  genomics
Ariba
Antimicrobial Resistance Identification By Assembly
Stars: ✭ 96 (-12.73%)
Mutual labels:  genomics
cloud-genomics
Introduction to Cloud Computing for Genomics
Stars: ✭ 13 (-88.18%)
Mutual labels:  genomics
Hail
Scalable genomic data analysis.
Stars: ✭ 706 (+541.82%)
Mutual labels:  genomics
netSmooth
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
Stars: ✭ 23 (-79.09%)
Mutual labels:  genomics
Dna Nn
Model and predict short DNA sequence features with neural networks
Stars: ✭ 59 (-46.36%)
Mutual labels:  genomics
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Stars: ✭ 64 (-41.82%)
Mutual labels:  genomics
Ncbi Genome Download
Scripts to download genomes from the NCBI FTP servers
Stars: ✭ 494 (+349.09%)
Mutual labels:  genomics
GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
Stars: ✭ 64 (-41.82%)
Mutual labels:  genomics
Igv Snapshot Automator
Script to automatically create and run IGV snapshot batchscripts
Stars: ✭ 83 (-24.55%)
Mutual labels:  genomics
mapcomp
Genetic Map Comparison
Stars: ✭ 18 (-83.64%)
Mutual labels:  genomics
Biojava
📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Stars: ✭ 434 (+294.55%)
Mutual labels:  genomics
bystro
Bystro genetic analysis (annotation, filtering, statistics)
Stars: ✭ 31 (-71.82%)
Mutual labels:  genomics
Genozip
Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
Stars: ✭ 53 (-51.82%)
Mutual labels:  genomics
dropClust
Version 2.1.0 released
Stars: ✭ 19 (-82.73%)
Mutual labels:  genomics
Vcflib
C++ library and cmdline tools for parsing and manipulating VCF files
Stars: ✭ 414 (+276.36%)
Mutual labels:  genomics
companion
This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
Stars: ✭ 21 (-80.91%)
Mutual labels:  genomics
Genomics
A collection of scripts and notes related to genomics and bioinformatics
Stars: ✭ 101 (-8.18%)
Mutual labels:  genomics
rare-disease-wf
(WIP) best-practices workflow for rare disease
Stars: ✭ 47 (-57.27%)
Mutual labels:  genomics
Jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
Stars: ✭ 404 (+267.27%)
Mutual labels:  genomics
arcsv
Complex structural variant detection from WGS data
Stars: ✭ 16 (-85.45%)
Mutual labels:  genomics
Dram
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Stars: ✭ 47 (-57.27%)
Mutual labels:  genomics
ntHash
Fast hash function for DNA sequences
Stars: ✭ 66 (-40%)
Mutual labels:  genomics
Bowtie2
A fast and sensitive gapped read aligner
Stars: ✭ 365 (+231.82%)
Mutual labels:  genomics
MTBseq source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Stars: ✭ 26 (-76.36%)
Mutual labels:  genomics
Scoary
Pan-genome wide association studies
Stars: ✭ 80 (-27.27%)
Mutual labels:  genomics
simplesam
Simple pure Python SAM parser and objects for working with SAM records
Stars: ✭ 50 (-54.55%)
Mutual labels:  genomics
Jvarkit
Java utilities for Bioinformatics
Stars: ✭ 313 (+184.55%)
Mutual labels:  genomics
shiny-iatlas
An interactive web portal for exploring immuno-oncology data
Stars: ✭ 43 (-60.91%)
Mutual labels:  genomics
Sns
Analysis pipelines for sequencing data
Stars: ✭ 43 (-60.91%)
Mutual labels:  genomics
enformer-pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Stars: ✭ 146 (+32.73%)
Mutual labels:  genomics
Gwa tutorial
A comprehensive tutorial about GWAS and PRS
Stars: ✭ 303 (+175.45%)
Mutual labels:  genomics
unimap
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
Stars: ✭ 76 (-30.91%)
Mutual labels:  genomics
Gcp For Bioinformatics
GCP Essentials for Bioinformatics Researchers
Stars: ✭ 95 (-13.64%)
Mutual labels:  genomics
Scaff10X
Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
Stars: ✭ 21 (-80.91%)
Mutual labels:  genomics
Seq
A high-performance, Pythonic language for bioinformatics
Stars: ✭ 263 (+139.09%)
Mutual labels:  genomics
jgi-query
A simple command-line tool to download data from Joint Genome Institute databases
Stars: ✭ 38 (-65.45%)
Mutual labels:  genomics
Gatk
Official code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+810.91%)
Mutual labels:  genomics
chanjo
Chanjo provides a better way to analyze coverage data in clinical sequencing.
Stars: ✭ 46 (-58.18%)
Mutual labels:  genomics
Postgui
A React web application to query and share any PostgreSQL database.
Stars: ✭ 260 (+136.36%)
Mutual labels:  genomics
barque
Environmental DNA metabarcoding taxonomic identification
Stars: ✭ 14 (-87.27%)
Mutual labels:  genomics
Sibeliaz
A fast whole-genome aligner based on de Bruijn graphs
Stars: ✭ 76 (-30.91%)
Mutual labels:  genomics
Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Stars: ✭ 257 (+133.64%)
Mutual labels:  genomics
Msprime
Simulate genealogical trees and genomic sequence data using population genetic models
Stars: ✭ 103 (-6.36%)
Mutual labels:  genomics
Smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Stars: ✭ 98 (-10.91%)
Mutual labels:  genomics
Bio
Bioinformatics library for .NET
Stars: ✭ 90 (-18.18%)
Mutual labels:  genomics
Fastq.bio
An interactive web tool for quality control of DNA sequencing data
Stars: ✭ 76 (-30.91%)
Mutual labels:  genomics
Bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Stars: ✭ 970 (+781.82%)
Mutual labels:  genomics
varsome-api-client-python
Example client programs for Saphetor's VarSome annotation API
Stars: ✭ 21 (-80.91%)
Mutual labels:  genomics
61-120 of 273 similar projects