DatakitConnect processes into powerful data pipelines with a simple git-like filesystem interface
Stars: ✭ 951 (+764.55%)
AtacseqATAC-seq peak-calling, QC and differential analysis pipeline
Stars: ✭ 72 (-34.55%)
Ensembl HiveEnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
Stars: ✭ 44 (-60%)
PpipeA simple and lightweight Rust library for making iterator pipelines concurrent
Stars: ✭ 13 (-88.18%)
MachineMachine is a workflow/pipeline library for processing data
Stars: ✭ 78 (-29.09%)
Nodespider[DEPRECATED] Simple, flexible, delightful web crawler/spider package
Stars: ✭ 33 (-70%)
Jira Steps PluginJenkins pipeline steps for integration with JIRA.
Stars: ✭ 88 (-20%)
SpewAutomatic Packaging and Distribution of Bioinformatics Pipelines
Stars: ✭ 21 (-80.91%)
Scrapy S3pipelineScrapy pipeline to store chunked items into Amazon S3 or Google Cloud Storage bucket.
Stars: ✭ 57 (-48.18%)
SnsAnalysis pipelines for sequencing data
Stars: ✭ 43 (-60.91%)
NgseasyDockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Stars: ✭ 80 (-27.27%)
Jenkins Workflowcontains handy groovy workflow-libs scripts
Stars: ✭ 41 (-62.73%)
DrakeAn R-focused pipeline toolkit for reproducibility and high-performance computing
Stars: ✭ 1,301 (+1082.73%)
Mlj.jlA Julia machine learning framework
Stars: ✭ 982 (+792.73%)
MlboxMLBox is a powerful Automated Machine Learning python library.
Stars: ✭ 1,199 (+990%)
NlpplnNLP pipeline software using common workflow language
Stars: ✭ 31 (-71.82%)
BlurrData transformations for the ML era
Stars: ✭ 96 (-12.73%)
Pytorch ToolbeltPyTorch extensions for fast R&D prototyping and Kaggle farming
Stars: ✭ 942 (+756.36%)
Irapintegrated RNA-seq Analysis Pipeline
Stars: ✭ 65 (-40.91%)
GollumAn n:m message multiplexer written in Go
Stars: ✭ 883 (+702.73%)
Bio embeddingsGet protein embeddings from protein sequences
Stars: ✭ 86 (-21.82%)
Brunch🍴 Web applications made easy. Since 2011.
Stars: ✭ 6,801 (+6082.73%)
TormesMaking whole bacterial genome sequencing data analysis easy
Stars: ✭ 56 (-49.09%)
SalmonteSalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
Stars: ✭ 49 (-55.45%)
CookiecutterDEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (-83.64%)
HookahA cross-platform tool for data pipelines.
Stars: ✭ 83 (-24.55%)
ForteForte is a flexible and powerful NLP builder FOR TExt. This is part of the CASL project: http://casl-project.ai/
Stars: ✭ 89 (-19.09%)
Jenkins OsGroovy pipeline jobs that build and test Container Linux with Jenkins
Stars: ✭ 43 (-60.91%)
SetlA simple Spark-powered ETL framework that just works 🍺
Stars: ✭ 79 (-28.18%)
RiversData Stream Processing API for GO
Stars: ✭ 39 (-64.55%)
PydisA simple longslit spectroscopy pipeline in Python
Stars: ✭ 37 (-66.36%)
CimonitorDisplays CI statuses on a dashboard and triggers fun modules representing the status!
Stars: ✭ 34 (-69.09%)
The AppSample application and CD Pipeline for DevOps Dojo
Stars: ✭ 88 (-20%)
FlowrRobust and efficient workflows using a simple language agnostic approach
Stars: ✭ 73 (-33.64%)
VenonaCodefresh runtime-environment agent
Stars: ✭ 31 (-71.82%)
DotnettencyMutlitenancy for dotnet applications
Stars: ✭ 100 (-9.09%)
MuA full-stack DevOps on AWS framework
Stars: ✭ 948 (+761.82%)
TdpThe Darkest Pipeline - Multithreaded pipelines for modern C++
Stars: ✭ 67 (-39.09%)
Git Push DeploySimple Automated CI/CD Pipeline for GitHub and GitLab Projects
Stars: ✭ 21 (-80.91%)
PipeDSP pipeline
Stars: ✭ 87 (-20.91%)
Steppy ToolkitCurated set of transformers that make your work with steppy faster and more effective 🔭
Stars: ✭ 21 (-80.91%)
StetlStetl, Streaming ETL, is a lightweight geospatial processing and ETL framework written in Python.
Stars: ✭ 64 (-41.82%)
Param pipeparameterized pipe in elixir: |n>
Stars: ✭ 14 (-87.27%)
NextflowA DSL for data-driven computational pipelines
Stars: ✭ 1,337 (+1115.45%)
QuagmirA python-based isomiR quantification and analysis pipeline
Stars: ✭ 9 (-91.82%)
Drake ExamplesExample workflows for the drake R package
Stars: ✭ 57 (-48.18%)
VectorA reliable, high-performance tool for building observability data pipelines.
Stars: ✭ 8,736 (+7841.82%)
ClusterflowA pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
Stars: ✭ 85 (-22.73%)
Stream Splicerstreaming pipeline with a mutable configuration
Stars: ✭ 52 (-52.73%)
Gitlab Dashboard📺 TV dashboard for a global view on Gitlab Pipelines
Stars: ✭ 107 (-2.73%)
SupraSUPRA: Software Defined Ultrasound Processing for Real-Time Applications - An Open Source 2D and 3D Pipeline from Beamforming to B-Mode
Stars: ✭ 96 (-12.73%)
VistrailsVisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Stars: ✭ 94 (-14.55%)
Dawn🌅 Dawn is a lightweight task management and build tool for front-end and nodejs.
Stars: ✭ 1,057 (+860.91%)