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poreCovSARS-CoV-2 workflow for nanopore sequence data
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wenganAn accurate and ultra-fast hybrid genome assembler
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haslrA fast tool for hybrid genome assembly of long and short reads
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pepperPEPPER-Margin-DeepVariant
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awesome-nanoporeA curated list of awesome nanopore analysis tools.
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poreplexA versatile sequenced read processor for nanopore direct RNA sequencing
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rerioResearch release basecalling models and configurations
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recentrifugeRecentrifuge: robust comparative analysis and contamination removal for metagenomics
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streamformaticsReal-time species-typing visualisation for nanopore data.
Stars: ✭ 13 (-27.78%)
tiptoftPredict plasmids from uncorrected long read data
Stars: ✭ 27 (+50%)
fast-sgFast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
Stars: ✭ 22 (+22.22%)
rkmhClassify sequencing reads using MinHash.
Stars: ✭ 42 (+133.33%)
interARTICInterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
Stars: ✭ 22 (+22.22%)
IsoQuantReference-based transcript discovery from long RNA read
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WinnowmapLong read / genome alignment software
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RATTLEReference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
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nanoflow🔬 De novo assembly of nanopore reads using nextflow
Stars: ✭ 20 (+11.11%)
vbz compressionVBZ compression plugin for nanopore signal data
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nanoseqNanopore demultiplexing, QC and alignment pipeline
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pychopperA tool to identify, orient, trim and rescue full length cDNA reads
Stars: ✭ 74 (+311.11%)
wubTools and software library developed by the ONT Applications group
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pipeline-pinfish-analysisPipeline for annotating genomes using long read transcriptomics data with pinfish
Stars: ✭ 27 (+50%)