37 Open source projects that are alternatives of or similar to TCGAbiolinksGUI

MaAsLin2: Microbiome Multivariate Association with Linear Models

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Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

Provide R access to the NCI Genomic Data Commons portal.

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Interactive R package to quantify, analyse and visualise alternative splicing

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

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Quantitative features for mass spectrometry data

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

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Conversion between scRNA-seq objects

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tidy processing of biological sequences in R

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

Import and summarize transcript-level estimates for gene-level analysis

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Contribute Packages to Bioconductor

Modeling and correcting fragment sequence bias for RNA-seq

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Convert between AnnData and SingleCellExperiment

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A R framework for pipeline benchmarking, with application to single-cell RNAseq

📚 R interface to the Bio-Formats library

Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

This is the ensembldb development repository.

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

Computable build reports, package metadata, and download stats from the Bioconductor project

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

🌈 𝐖𝐖𝐃𝐂 𝐒𝐞𝐬𝐬𝐢𝐨𝐧 𝐍𝐨𝐭𝐞𝐬 👩🏻‍💻 ✨

common useful script

Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data

Cancer-dedicated gene set interpretation