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Stars: ✭ 88 (+340%)
traitarFrom genomes to phenotypes: Traitar, the microbial trait analyzer
Stars: ✭ 41 (+105%)
taxoniumA tool for exploring very large trees in the browser
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FAVITESFAVITES (FrAmework for VIral Transmission and Evolution Simulation)
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BiopythonOfficial git repository for Biopython (originally converted from CVS)
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libpllPhylogenetic Likelihood Library
Stars: ✭ 21 (+5%)
archaeopteryx-jsArchaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
Stars: ✭ 27 (+35%)
PCG𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
Stars: ✭ 20 (+0%)
CAFE5Version 5 of the CAFE phylogenetics software
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genesisA library for working with phylogenetic and population genetic data.
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PyPHLAWDPython version of PHLAWD
Stars: ✭ 16 (-20%)
phylogenetics-classA course in the theory and practice of phylogenetic inference from DNA sequence data
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phymlPhyML -- Phylogenetic estimation using (Maximum) Likelihood
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seqotronAlignment editor for Mac OS X
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pastmlAncestor character reconstruction and visualisation for rooted phylogenetic trees
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BuddySuiteBioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
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get phylomarkersA pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches
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balticbaltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
Stars: ✭ 60 (+200%)
RNeXMLImplementing semantically rich NeXML I/O in R
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boosterbooster.c3bi.pasteur.fr
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r2gA homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
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q2-qemistreeHierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
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usherUltrafast Sample Placement on Existing Trees
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stsSequential Tree Sampler for online phylogenetics
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phylonium♥ Fast and Accurate Estimation of Evolutionary Distances
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