BiopythonOfficial git repository for Biopython (originally converted from CVS)
Stars: โญ 2,936 (+14580%)
Mutual labels: bioinformatics, phylogenetics
PhyloTrees.jlPhylogenetic trees in Julia
Stars: โญ 15 (-25%)
Mutual labels: bioinformatics, phylogenetics
ensembl-comparaThe Ensembl Compara Perl API and SQL schema
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Mutual labels: bioinformatics, comparative-genomics
SibeliazA fast whole-genome aligner based on de Bruijn graphs
Stars: โญ 76 (+280%)
Mutual labels: bioinformatics, graph-algorithms
CAFE5Version 5 of the CAFE phylogenetics software
Stars: โญ 53 (+165%)
Mutual labels: bioinformatics, phylogenetics
echolocatoRAutomated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Stars: โญ 13 (-35%)
Mutual labels: bioinformatics
CellOCellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Stars: โญ 34 (+70%)
Mutual labels: bioinformatics
SigProfilerExtractorSigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenโฆ
Stars: โญ 86 (+330%)
Mutual labels: bioinformatics
CAMSACAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Stars: โญ 18 (-10%)
Mutual labels: comparative-genomics
SemiBinNo description or website provided.
Stars: โญ 25 (+25%)
Mutual labels: bioinformatics
gencoreGenerate duplex/single consensus reads to reduce sequencing noises and remove duplications
Stars: โญ 91 (+355%)
Mutual labels: bioinformatics
RcpiMolecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
Stars: โญ 22 (+10%)
Mutual labels: bioinformatics
picardmetrics๐ฆ Run Picard on BAM files and collate 90 metrics into one file.
Stars: โญ 38 (+90%)
Mutual labels: bioinformatics
tiptoftPredict plasmids from uncorrected long read data
Stars: โญ 27 (+35%)
Mutual labels: bioinformatics
wikicrushProcessor scripts for Wikipedia dumps to crush them into a dense binary format that is easy to pathfind with.
Stars: โญ 46 (+130%)
Mutual labels: graph-algorithms
snpsea๐ Identify cell types and pathways affected by genetic risk loci.
Stars: โญ 26 (+30%)
Mutual labels: bioinformatics
argo-graph-liteInteractive Graph Visualization in Your Browser
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Mutual labels: graph-algorithms
Competitive-ProgrammingThis repo conatins the code of the problems practised by me on Codeforces,Codedchef,Leetcode,Geeks For Geeks
Stars: โญ 14 (-30%)
Mutual labels: graph-algorithms
virnetVirNet: A deep attention model for viral reads identification
Stars: โญ 26 (+30%)
Mutual labels: bioinformatics
