23andme2vcfconvert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf
Stars: ✭ 91 (-3.19%)
OntologiesHome of the Genomic Feature and Variation Ontology (GFVO)
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TypeTEGenotyping of segregating mobile elements insertions
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vcf2gwasPython API for comprehensive GWAS analysis using GEMMA
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SVCollectorMethod to optimally select samples for validation and resequencing
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jannovarAnnotation of VCF variants with functional impact and from databases (executable+library)
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cutevariantA standalone and free application to explore genetics variations from VCF file
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vcf2tsvGenomic VCF to tab-separated values
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fucFrequently used commands in bioinformatics
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ilusA handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
Stars: ✭ 64 (-31.91%)
cpsrCancer Predisposition Sequencing Reporter (CPSR)
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indelopefind large indels (in the blind spot between GATK/freebayes and SV callers)
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snpstools for reading, writing, merging, and remapping SNPs
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vcfstatsPowerful statistics for VCF files
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spark-vcfSpark VCF data source implementation for Dataframes
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SNPGenieProgram for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
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2vcfconvert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
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calcardbackupcalcardbackup: moved to https://codeberg.org/BernieO/calcardbackup
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vcf stuff📊Evaluating, filtering, comparing, and visualising VCF
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CuteVCFsimple viewer for variant call format using htslib
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laravel-vcardA fluent builder class for vCard files.
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vembranevembrane filters VCF records using python expressions
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Variants2NeoantigenA neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
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csv2vcf🔧 Simple script in python to convert CSV files to VCF
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cljamA DNA Sequence Alignment/Map (SAM) library for Clojure
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Hap.pyHaplotype VCF comparison tools
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Snippy✂️ ⚡️ Rapid haploid variant calling and core genome alignment
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Cyvcf2cython + htslib == fast VCF and BCF processing
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Vcf2mafConvert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
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HtsjdkA Java API for high-throughput sequencing data (HTS) formats.
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SurvivorToolset for SV simulation, comparison and filtering
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PcgrPersonal Cancer Genome Reporter (PCGR)
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BiosyntaxSyntax highlighting for computational biology
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Vcf2phylipConvert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
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GenomicsA collection of scripts and notes related to genomics and bioinformatics
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ParagraphGraph realignment tools for structural variants
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TruvariStructural variant toolkit for VCFs
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SvtyperBayesian genotyper for structural variants
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GenozipCompressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
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16gtSimultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
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Tiledb VcfEfficient variant-call data storage and retrieval library using the TileDB storage library.
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GvannoGeneric germline variant annotation pipeline
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Helmsmanhighly-efficient & lightweight mutation signature matrix aggregation
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HailScalable genomic data analysis.
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HtslibC library for high-throughput sequencing data formats
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VcardThis vCard PHP library can easily parse or generate/export vCards as .vcf
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PygenoPersonalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
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Vcfannoannotate a VCF with other VCFs/BEDs/tabixed files
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