bioSyntax / Biosyntax
Licence: gpl-3.0
Syntax highlighting for computational biology
Stars: ✭ 164
Programming Languages
shell
77523 projects
Projects that are alternatives of or similar to Biosyntax
bioSyntax-archive
Syntax highlighting for computational biology
Stars: ✭ 16 (-90.24%)
Mutual labels: syntax-highlighting, less, pdb, vcf
Better-Less
Cross-compatible syntax highlighting for Less
Stars: ✭ 13 (-92.07%)
Mutual labels: syntax-highlighting, less, sublime-text
Sublimetext
Caddyfile syntax highlighting for Sublime Text 3
Stars: ✭ 17 (-89.63%)
Mutual labels: sublime-text, syntax-highlighting
Helmsman
highly-efficient & lightweight mutation signature matrix aggregation
Stars: ✭ 19 (-88.41%)
Mutual labels: bioinformatics, vcf
16gt
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Stars: ✭ 26 (-84.15%)
Mutual labels: bioinformatics, vcf
Sublime Markdown Extended
Top 100 Sublime Text plugin! Markdown syntax highlighter for Sublime Text, with extended support for GFM fenced code blocks, with language-specific syntax highlighting. YAML Front Matter. Works with ST2/ST3. Goes great with Assemble.
Stars: ✭ 645 (+293.29%)
Mutual labels: sublime-text, syntax-highlighting
Pdbpp
pdb++, a drop-in replacement for pdb (the Python debugger)
Stars: ✭ 693 (+322.56%)
Mutual labels: pdb, syntax-highlighting
Tiledb Vcf
Efficient variant-call data storage and retrieval library using the TileDB storage library.
Stars: ✭ 26 (-84.15%)
Mutual labels: bioinformatics, vcf
Packagedev
Tools to ease the creation of snippets, syntax definitions, etc. for Sublime Text.
Stars: ✭ 378 (+130.49%)
Mutual labels: sublime-text, syntax-highlighting
Svtyper
Bayesian genotyper for structural variants
Stars: ✭ 79 (-51.83%)
Mutual labels: bioinformatics, vcf
Pythonimproved
The best Python language definition for Sublime Text - ever. Includes full support for Unicode, as well as both Python 2 and Python 3 syntax. Check out the Neon Color Scheme for highlighting.
Stars: ✭ 95 (-42.07%)
Mutual labels: sublime-text, syntax-highlighting
Htslib
C library for high-throughput sequencing data formats
Stars: ✭ 529 (+222.56%)
Mutual labels: bioinformatics, vcf
Sublime Monokai Extended
Extends Monokai from Soda with additional syntax highlighting for Markdown, LESS, HTML, Handlebars and more.
Stars: ✭ 505 (+207.93%)
Mutual labels: sublime-text, syntax-highlighting
Biojava
📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Stars: ✭ 434 (+164.63%)
Mutual labels: bioinformatics, pdb
New Moon
🌙 The optimized dark theme for web development.
Stars: ✭ 918 (+459.76%)
Mutual labels: syntax-highlighting, less
Nord Sublime Text
An arctic, north-bluish clean and elegant Sublime Text theme.
Stars: ✭ 109 (-33.54%)
Mutual labels: sublime-text, syntax-highlighting
Handlebars
Fullest Handlebars.js templating support for Atom and Sublime Text 2 / 3. Also drives syntax colouring on Github and in Visual Studio Code. Install from: https://atom.io/packages/Handlebars and https://packagecontrol.io/packages/Handlebars.
Stars: ✭ 292 (+78.05%)
Mutual labels: sublime-text, syntax-highlighting
Biopandas
Working with molecular structures in pandas DataFrames
Stars: ✭ 329 (+100.61%)
Mutual labels: bioinformatics, pdb
Syntax highlighting for computational biology to bring you intuitively close to your data.
Support in vim, less, sublime3 & gedit for .sam, .flagstat, .vcf, .fasta, .fastq, .faidx, .clustal, .pdb, .gtf, .bed files & more.
bioSyntax.org
We'd like to know how bioSyntax can be developed to help your workflow. Tell us what you think! (~5m)
Usage
bioSyntax integrates seamlessly with your text editor, recognizing data-type by the file extension or streamed into less.
To gain the most insight from your data, read our brief bioSyntax Manual.
Download Latest Release
Install
Screenshots
samtools view -h NA19238.bam | sam-less -
Collaborate
Dev Team: Artem Babaian | Dylan Aïssi | Anicet Ebou | Alyssa Fegen | Jeffrey Kam | Gherman Novakovskiy | Li Yao | Jasper Wong
Contact us: info[AT]biosyntax.org
A hackseq17 Initiative.
Note that the project description data, including the texts, logos, images, and/or trademarks,
for each open source project belongs to its rightful owner.
If you wish to add or remove any projects, please contact us at [email protected].