13 open source projects by WGLab

A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list

a hidden Markov model to infer simple repeats from genome sequences

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

Copy number vaiation detection from SNP arrays

Documentation for the ANNOVAR software

phenotype-based prioritization of candidate genes for human diseases

iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient

Tutorial on building a computing cluster for bioinformatics

Automated human exome/genome variants detection from FASTQ files

A set of software tools to facilitate GWAS analysis

NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data

HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data

A python package for the identification of lncRNA from the assembled novel transcripts