8 open source projects by genome

count DNA sequence reads in BAM files

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

SV detection from paired end reads mapping

An R package for inferring the subclonal architecture of tumors

The Genome Modeling System installer

Core modules used by the GMS

a tool for processing .bed and .vcf files

Open workflow definitions for genomic analysis from MGI at WUSM.