All Programming Languages → Common Workflow Language

Top 39 Common Workflow Language open source projects

1. TW Thesis Template
The LaTeX Template for TW Thesis 台灣碩博士 LaTeX 論文樣板
2. platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
3. cwlexec
A new open source tool to run CWL workflows on LSF
5. CWL-workflows
Workflows written in common workflow language (CWL)
6. mc3
No description, website, or topics provided.
7. argparse2tool
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
8. pipelines
No description, website, or topics provided.
11. pcawg delly workflow
A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow
12. python-cwlgen
Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
14. atropos
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
16. pitagora-cwl
Common Workflow Language tools and workflows by Pitagora-Network
17. cwl2nxf
Import a CWL workflow specification to Nextflow script (experimental)
18. hotsub
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
19. cwl-ts
Typescript data model for Common Workflow Language
20. CICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
21. VIRTUS
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
22. emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
23. scriptcwl
Create cwl workflows by writing a simple Python script
24. nextflow-demos
Example Nextflow pipelines and programming techniques
25. protect
No description, website, or topics provided.
27. tex
This repository provides convenient and readable macros for commonly used syntax when writing scientific articles about machine learning.
28. BAMscale
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
31. wdl2cwl
[Experimental] Workflow Definition Language (WDL) to CWL
33. bcbio validation workflows
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
34. cwl-airflow-parser
Package to extend Airflow functionality with CWL v1.0 support
35. analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
36. cwl-WES
Trigger CWL workflows via GA4GH WES and TES
37. pgap
NCBI Prokaryotic Genome Annotation Pipeline
38. workflUX
An open-source, cloud-ready web application for simplified deployment of big data workflows.
39. cwl-metrics
Accumulating container resource usage with workflow metadata
1-39 of 39 Common Workflow Language projects