2. platonIdentification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
3. cwlexecA new open source tool to run CWL workflows on LSF
4. Front-EndFederated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/
6. mc3No description, website, or topics provided.
7. argparse2tooltransparently build CWL and Galaxy XML tool definitions for any script that uses argparse
9. ikraRNAseq pipeline centered on Salmon
12. python-cwlgenGeneration of CWL programmatically. Available types: CommandLineTool and DockerRequirement
14. atroposAn NGS read trimming tool that is specific, sensitive, and speedy. (production)
16. pitagora-cwlCommon Workflow Language tools and workflows by Pitagora-Network
17. cwl2nxfImport a CWL workflow specification to Nextflow script (experimental)
18. hotsubCommand line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
19. cwl-tsTypescript data model for Common Workflow Language
20. CICEROCICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
21. VIRTUSA bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
22. emg-viral-pipelineVIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
23. scriptcwlCreate cwl workflows by writing a simple Python script
25. protectNo description, website, or topics provided.
27. texThis repository provides convenient and readable macros for commonly used syntax when writing scientific articles about machine learning.
28. BAMscaleBAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
29. dockstoreOur VM/Docker sharing infrastructure and management component
31. wdl2cwl[Experimental] Workflow Definition Language (WDL) to CWL
37. pgapNCBI Prokaryotic Genome Annotation Pipeline
38. workflUXAn open-source, cloud-ready web application for simplified deployment of big data workflows.
39. cwl-metricsAccumulating container resource usage with workflow metadata