1. NitimeTimeseries analysis for neuroscience data
2. PysurferCortical neuroimaging visualization in Python
3. HeudiconvA flexible DICOM converter for organizing brain imaging data into structured directory layouts
4. MindboggleAutomated anatomical brain label/shape analysis software (+ website)
5. PbrainPython EEG and ECoG analysis software by John Hunter et al
7. NipypeWorkflows and interfaces for neuroimaging packages
8. NibabelPython package to access a cacophony of neuro-imaging file formats
9. NipyNeuroimaging in Python FMRI analysis package
11. brainxTools for analysis of brain imaging-derived networks, based on NetworkX
12. nilabelsTools to automate simple manipulations and measurements of medical images and segmentations in nifti format.