12 open source projects by openworm

Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

Unified, simple data access python library for data & facts about C. elegans anatomy

NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302

Project Home repo for Central Dockerfile and Project-wide issues

Documentation for OpenWorm

Neuromechanical model of C. Elegans

This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans

Model of c.elegans muscle

Geppetto core bundle

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

The c302 framework