3 open source projects by pirovc

ganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and hierarchical classification, customized reporting and more

✭ 57

python C++shell CMake bioinformatics bloom-filter metagenomics microbiome k-mer minimizers refseq-genbank

2. multitax

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

✭ 22

python shell taxonomies tree taxonomy ncbi ott silva greengenes gtdb pyhton-library open-tree-taxonomy biological-taxonomies

3. genome updater

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

✭ 93

shell bioinformatics database genome download genbank sequence ncbi refseq

1-3 of 3 user projects