Top 6 ncbi open source projects

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

🐞 Convert NCBI taxonomy dump into lineages

Mapping NCBI Genbank accession to GTDB accession

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy