7 open source projects by saezlab

CAusal Reasoning for Network Identification with integer VALue programming in R

R package for Pathway RespOnsive GENe activity inference

This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL

Spatial transcriptomics of heart tissue

R package to access DoRothEA's regulons

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

LIANA: a LIgand-receptor ANalysis frAmework