2. PlassProtein-Level ASSembler (PLASS): sensitive and precise protein assembler
3. Mmseqs2MMseqs2: ultra fast and sensitive search and clustering suite
6. WIsHPredict prokaryotic host for phage metagenomic sequences
7. merlotReconstruct the lineage topology of a scRNA-seq differentiation dataset.
8. BaMMmotifBayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
10. prossttPRObabilistic Simulations of ScRNA-seq Tree-like Topologies