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Top 4 cell-biology open source projects

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

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Jupyter Notebook python shell machine-learning bioinformatics rna-seq computational-biology ontologies cell-type-classification single-cell-rna-seq cell-biology cell-type

u-shape3D

Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.

✭ 20

matlab image-analysis cell-biology light-sheet-microcopy morphology-analysis

pytorch integrated cell

Integrated Cell project implemented in pytorch

✭ 40

python machine-learning pytorch generative-adversarial-network neural-networks autoencoder science-research cell-analysis cell-biology

u-track

Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events

✭ 35

matlab bioinformatics particle-tracking cell-biology particle-trajectories

1-4 of 4 cell-biology projects