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Top 3 qtl open source projects

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

✭ 13

r python bioinformatics gwas linkage-disequilibrium qtl variant-annotation colocalization finemap echoverse

Mixed models @lme4 + custom covariances + parameter constraints

✭ 39

r gwas ibd family covariance qtl pedigree random-effects kinship relatedness lme4 variance-covariance

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

✭ 20

C++c r shell qtl

1-3 of 3 qtl projects