Top 16 gwas open source projects

📊 Identify cell types and pathways affected by genetic risk loci.

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Find causal cell-types underlying complex trait genetics

GWAS summary statistics files QC tool

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

Python API for comprehensive GWAS analysis using GEMMA

Heritability, genetic correlation and functional enrichment estimation for case-control studies

Adjacency-constrained hierarchical clustering of a similarity matrix

A faster lmm for GWAS. Supports GPU backend.

Perform GWAS using the FarmCPU model.

Cell type specific enrichments using finemapped variants and quantitative epigenetic data

Mixed models @lme4 + custom covariances + parameter constraints

Visual Machine Learning of Genome-Phenome Associations

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

Quantitative Trait Cluster Association Test in R

Rare variant test software for next generation sequencing data