1. AMPHORA2An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
2. bio-pipelineMy collection of light bioinformatics analysis pipelines for specific tasks
3. pep9Pep/9 assembler and simulator for the textbook Computer Systems, J. Stanley Warford, Fifth edition
4. ANGELRobust Open Reading Frame prediction (ANGLE re-implementation)
6. pep9suitePep9Suite is a suite of software for the Pep/9 virtual machine described in the text Computer Systems, J. Stanley Warford, fifth edition.