AssemblyticsAssemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
Stars: ✭ 105 (+75%)
Mutual labels: genomics
nuxt-realworld🛠 Built a Example App of RealWorld with Nuxt & Composition API ⚗️
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Mutual labels: experimental
interARTICInterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
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Mutual labels: genomics
koverLearn interpretable computational phenotyping models from k-merized genomic data
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Mutual labels: genomics
TOGATOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
Stars: ✭ 35 (-41.67%)
Mutual labels: genomics
html-over-dnsAn experiment to host a website with the content served over DNS.
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Mutual labels: experimental
ipyradInteractive assembly and analysis of RAD-seq data sets
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Mutual labels: genomics
open-cravatA modular annotation tool for genomic variants
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Mutual labels: genomics
jbrowse-componentsMonorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
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Mutual labels: genomics
traffic-predictionPredict traffic flow with LSTM. For experimental purposes only, unsupported!
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Mutual labels: experimental
RATTLEReference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
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Mutual labels: genomics
get phylomarkersA pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches
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Mutual labels: genomics
souporcellClustering scRNAseq by genotypes
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Mutual labels: genomics
mgatkmgatk: mitochondrial genome analysis toolkit
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Mutual labels: genomics
hts-pythonpythonic wrapper for htslib
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Mutual labels: genomics
stuccoAn experimental adaptive UI toolkit.
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Mutual labels: experimental
rnaseq-nfA proof of concept of RNAseq pipeline
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Mutual labels: genomics
chanjoChanjo provides a better way to analyze coverage data in clinical sequencing.
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Mutual labels: genomics
barqueEnvironmental DNA metabarcoding taxonomic identification
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Mutual labels: genomics
OnceBuilderOnceBuilder - managment tool, mange projects, templates, plugins in one place.
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Mutual labels: experimental
