Frequently used commands in bioinformatics

A DNA Sequence Alignment/Map (SAM) library for Clojure

Fast and accurate sequence demultiplexing

A D library for computational biology and bioinformatics

pythonic wrapper for htslib

Simple pure Python SAM parser and objects for working with SAM records

Bioinformatics library in Kotlin

A simple tool to calculate reads number and total base count in FASTQ file

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Simple FASTQ quality assessment using Python

C library for high-throughput sequencing data formats

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

Efficient handling of FASTQ files from Python

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

A Java API for high-throughput sequencing data (HTS) formats.

Syntax highlighting for computational biology

This project is an example about lambda, SAM, dynamodb. This repository contains source code and supporting files for a serverless application that you can deploy with the SAM CLI. It includes the following files and folders.