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Top 13 bam open source projects

A D library for computational biology and bioinformatics

✭ 45

d Ragel bioinformatics sam bam

Fast and accurate sequence demultiplexing

✭ 14

C++python HTML shell c Makefile CSS autocomplete tagging sequencing barcode sam robust tag bam fastq multiplexing cram demultiplexing classifiers

Simple pure Python SAM parser and objects for working with SAM records

✭ 50

python bioinformatics genomics sam bam

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

pythonic wrapper for htslib

✭ 18

python c shell bioinformatics genomics sam bam htslib

Frequently used commands in bioinformatics

✭ 23

python visualization api cli bioinformatics sam vcf fasta gtf bed maf bam fastq cram gff

Bioinformatics library in Kotlin

✭ 21

kotlin hmm bioinformatics progress methylation dataset fasta chip-seq sampling bed bam dataframe fastq mixture hypothesis-testing 2bit cancellable dna-sequence

nest-rabbit-tasks

nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS

✭ 29

typescript javascript nodejs rabbitmq amqp bam amqp0-9-1 nestjs

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

✭ 48

python c shell bioinformatics genomics sam fasta bam htslib

My bioinfo toolbox

✭ 42

python shell perl c bioinformatics ngs sam bam filtering fastq

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

✭ 21

r python Dockerfile shell quality-control cancer coverage-report sequencing next-generation-sequencing cancer-genomics alignment quality-assurance command-line-tool bam clinical-decision-support pathogenic-variants sequencing-coverage pathogenic-loci

bioSyntax-archive

Syntax highlighting for computational biology

✭ 16

Vim Script shell awk syntax-highlighting vim less bioinformatics sublime pdb computational-biology sam gedit vcf fasta bam

A DNA Sequence Alignment/Map (SAM) library for Clojure

✭ 85

clojure bioinformatics genomics sam vcf fasta bigwig bed bam fastq bcf wig gff 2bit

1-13 of 13 bam projects