HeliosThe free embedded operating system.
HtsjdkA Java API for high-throughput sequencing data (HTS) formats.
Esp8266samSpeech synthesis for ESP8266 using S.A.M. port
GtzA high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Sessions With Aws SamThis repo contains all the SAM templates created in the Twitch series #SessionsWithSAM. The show is every Thursday on Twitch at 10 AM PDT.
Aws Serverless Airline BookingAirline Booking is a sample web application that provides Flight Search, Flight Payment, Flight Booking and Loyalty points including end-to-end testing, GraphQL and CI/CD. This web application was the theme of Build on Serverless Season 2 on AWS Twitch running from April 24th until end of August in 2019.
GenozipCompressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
TranscriptcleanCorrect mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
Dsinternals Directory Services Internals (DSInternals) PowerShell Module and Framework
GofaasA boilerplate Go and AWS Lambda app. Demonstrates an expert configuration of 10+ AWS services to support running Go functions-as-a-service (FaaS).
Aws Sam CliCLI tool to build, test, debug, and deploy Serverless applications using AWS SAM
HtslibC library for high-throughput sequencing data formats
Serverless ExpressRun Node.js web applications and APIs using existing application frameworks on AWS #serverless technologies such as Lambda, API Gateway, Lambda@Edge, and ALB.
SambambaTools for working with SAM/BAM data
Aws Serverless Workshop Innovator IslandWelcome to the Innovator Island serverless workshop! This repo contains all the instructions and code you need to complete the workshop. Questions? Contact @jbesw.
SamSAM: Sharpness-Aware Minimization (PyTorch)
Aws Cognito Apigw Angular AuthA simple/sample AngularV4-based web app that demonstrates different API authentication options using Amazon Cognito and API Gateway with an AWS Lambda and Amazon DynamoDB backend that stores user details in a complete end to end Serverless fashion.
faaskitA lightweight middleware framework for functions as a service
BioDA D library for computational biology and bioinformatics
pheniqsFast and accurate sequence demultiplexing
samSAM: Software Automatic Mouth (Ported from https://github.com/vidarh/SAM)
sam.pytorchA PyTorch implementation of Sharpness-Aware Minimization for Efficiently Improving Generalization
simplesamSimple pure Python SAM parser and objects for working with SAM records
fucFrequently used commands in bioinformatics
hts-pythonpythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
qp-arduinoQP real-time embedded frameworks/RTOS for Arduino (AVR and SAM)
editA stand-alone implementation of the Acme text editor's command language.
connect-backupA tool to backup and restore AWS Connect, with some useful other utilities too
pipeVFXA Visual Effects pipeline to manage jobs, shots and software assignment, with a simple asset manager. Its extensively integrated with CortexVFX and Gaffer. (and it builds booth, with support for Maya, Houdini and Nuke, if you have then installed!)
Arduino-GPIOGeneral Purpose Input/Output (GPIO) library for Arduino
sam-python-crud-sampleThis project is an example about lambda, SAM, dynamodb. This repository contains source code and supporting files for a serverless application that you can deploy with the SAM CLI. It includes the following files and folders.
setup-samAction to set up AWS SAM CLI and add it to the PATH
fastqpSimple FASTQ quality assessment using Python
sam-scaffoldA template for an AWS SAM project with continuous integration.
cljamA DNA Sequence Alignment/Map (SAM) library for Clojure