bapBead-based single-cell atac processing
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Mutual labels: genomics, epigenetics, single-cell
switchdeInference of switch-like differential expression along single-cell trajectories
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Mutual labels: genomics, single-cell
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Mutual labels: genomics, single-cell
netSmoothnetSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
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Mutual labels: genomics, single-cell
gchromVARCell type specific enrichments using finemapped variants and quantitative epigenetic data
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Mutual labels: epigenetics, single-cell
spark-vcfSpark VCF data source implementation for Dataframes
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Mutual labels: genomics, genotype
GCModellerGCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
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Mutual labels: genomics, single-cell
region-plotA tool to plot significant regions of GWAS
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Mutual labels: genomics
adaptA package for designing activity-informed nucleic acid diagnostics for viruses.
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Mutual labels: genomics
dee2Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
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Mutual labels: genomics
BALSAMICBioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
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Mutual labels: genomics
gnomixA fast, scalable, and accurate local ancestry method.
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Mutual labels: genomics
bxtoolsTools for analyzing 10X Genomics data
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Mutual labels: genomics
tidygenomicsTidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
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Mutual labels: genomics
gosling.jsGrammar of Scalable Linked Interactive Nucleotide Graphics
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Mutual labels: genomics
TADLibA Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
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Mutual labels: genomics
OrchestratingSingleCellAnalysis-releaseAn online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
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Mutual labels: single-cell
PandoMultiome GRN inference.
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Mutual labels: single-cell
MindTheGapMindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
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Mutual labels: genomics
crop-seqData analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
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Mutual labels: single-cell
