1. Quota AlignmentGuided synteny alignment between duplicated genomes (within specified quota constraint)
2. GoatoolsPython library to handle Gene Ontology (GO) terms
3. JcviPython library to facilitate genome assembly, annotation, and comparative genomics
4. mcscanCommand-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
5. treecutFind nodes in hierarchical clustering that are statistically significant
6. bio-pipelineMy collection of light bioinformatics analysis pipelines for specific tasks