The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

RosettaDesign

RosettaDesign using PyRosetta

✭ 19

python pdb backbone ab-initio protein-design pyrosetta

teamcity-symbol-server

TeamCity Symbol Server plugin

✭ 16

java C#pdb teamcity teamcity-plugin

docker-pudb

Debug Python code within a Docker container remotely from your terminal using pudb

✭ 18

python Dockerfile debugger docker debugging dockerfile docker-compose pdb telnet debug hacktoberfest ipdb debugging-tools pudb debugging-tool

ircpdb

Remotely and collaboratively debug your Python application via an IRC channel.

✭ 59

python debugger debugging irc pdb collaboration collaborative

cath-tools

Protein structure comparison tools such as SSAP and SNAP

✭ 40

C++HTML CMake bioinformatics biology pdb structure protein alignment ssap orengo cath superposition ucl cath-resolve-hits

pdb-benchmarks

Benchmarking common tasks on proteins in various languages and packages

✭ 33

python shell C++julia java r bioinformatics pdb comparison benchmarks mmcif structural-bioinformatics mmtf pdb-files

ProteinSecondaryStructure-CNN

Protein Secondary Structure predictor using Convolutional Neural Networks

✭ 82

python machine-learning deep-learning pdb chain protein-structure keras cnn structure-prediction protein-prediction cullpdb

dssp

Application to assign secondary structure to proteins

✭ 56

C++CMake proteins pdb dssp

DbgSymGrabber

Just another tool to download specify Symbol (.pdb) files

✭ 35

C++c pdb windbg symbol-files

pdbfetch

Fetch PDB symbols directly from Microsoft's symbol servers

✭ 33

go downloader pdb debug portable-executable

symreader-converter

Converts between Windows PDB and Portable PDB formats.

✭ 50

C#powershell shell CMake debugging converter pdb crossplatform managed windows-pdb portable-pdb

nopdb

NoPdb: Non-interactive Python Debugger

✭ 67

python debugger machine-learning pdb tracing developer-tools programmatic intercept-calls debugging-tools debugging-tool function-hooks

RamaNet

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

✭ 41

python Jupyter Notebook machine-learning topology neural-network hpc pdb protein-structure dataset ab-initio amino-acids denovo protein-design rmsd denovo-design

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

✭ 240

python TeX bioinformatics structural-biology pdb protein structural-bioinformatics utrecht-university rcsb

MolArt

MOLeculAR structure annoTator

✭ 25

javascript CSS visualization pdb protein-structure uniprot protein-sequence sequence-annotations protvista litemol

libmol

Single Page Web Application for displaying and studying molecular models

✭ 29

Vue javascript typescript HTML CSS PHP science education bioinformatics vue pdb molecular-graphics biological-structures ngl

SQLCallStackResolver

Utility to resolve SQL Server callstacks to their correct symbolic form using just PDBs and without a dump file

✭ 55

debugging stack dll frames pdb internals performance-analysis windbg callstack sqlserver troubleshooting hacktoberfest clrmd sqlserver-2017 xevents sql-releases sqlserver-2019 pdbs msdia140 diasdk

bioSyntax-archive

Syntax highlighting for computational biology

✭ 16

Vim Script shell awk syntax-highlighting vim less bioinformatics sublime pdb computational-biology sam gedit vcf fasta bam

1-49 of 49 pdb projects