BenLangmead / Bowtie
Licence: artistic-2.0
An ultrafast memory-efficient short read aligner
Stars: ✭ 221
Labels
Projects that are alternatives of or similar to Bowtie
Miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
Stars: ✭ 216 (-2.26%)
Mutual labels: bioinformatics, genomics
Awesome Bioinformatics Benchmarks
A curated list of bioinformatics bench-marking papers and resources.
Stars: ✭ 142 (-35.75%)
Mutual labels: bioinformatics, genomics
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Stars: ✭ 135 (-38.91%)
Mutual labels: bioinformatics, genomics
Bedops
🔬 BEDOPS: high-performance genomic feature operations
Stars: ✭ 215 (-2.71%)
Mutual labels: bioinformatics, genomics
Hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Stars: ✭ 138 (-37.56%)
Mutual labels: bioinformatics, genomics
Roary
Rapid large-scale prokaryote pan genome analysis
Stars: ✭ 176 (-20.36%)
Mutual labels: bioinformatics, genomics
Hts Nim
nim wrapper for htslib for parsing genomics data files
Stars: ✭ 132 (-40.27%)
Mutual labels: bioinformatics, genomics
Minigraph
Proof-of-concept seq-to-graph mapper and graph generator
Stars: ✭ 206 (-6.79%)
Mutual labels: bioinformatics, genomics
Janggu
Deep learning infrastructure for bioinformatics
Stars: ✭ 174 (-21.27%)
Mutual labels: bioinformatics, genomics
Intermine
A powerful open source data warehouse system
Stars: ✭ 195 (-11.76%)
Mutual labels: bioinformatics, genomics
Genometools
GenomeTools genome analysis system.
Stars: ✭ 186 (-15.84%)
Mutual labels: bioinformatics, genomics
Hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Stars: ✭ 134 (-39.37%)
Mutual labels: bioinformatics, genomics
Deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+987.78%)
Mutual labels: bioinformatics, genomics
Octopus
Bayesian haplotype-based mutation calling
Stars: ✭ 131 (-40.72%)
Mutual labels: bioinformatics, genomics
Goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
Stars: ✭ 175 (-20.81%)
Mutual labels: bioinformatics, genomics
Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Stars: ✭ 124 (-43.89%)
Mutual labels: bioinformatics, genomics
Somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Stars: ✭ 128 (-42.08%)
Mutual labels: bioinformatics, genomics
Deep Rules
Ten Quick Tips for Deep Learning in Biology
Stars: ✭ 179 (-19%)
Mutual labels: bioinformatics, genomics
Ribbon
A genome browser that shows long reads and complex variants better
Stars: ✭ 184 (-16.74%)
Mutual labels: bioinformatics, genomics
Bowtie: http://bowtie-bio.sf.net
- See AUTHORS for information about who wrote Bowtie and its various components.
- See LICENSE for license information.
- See MANUAL for detailed information on how to use Bowtie.
- See NEWS for information about changes in this and previous versions of Bowtie.
- See TUTORIAL for a quick example to get you started with Bowtie.
Note that the project description data, including the texts, logos, images, and/or trademarks,
for each open source project belongs to its rightful owner.
If you wish to add or remove any projects, please contact us at [email protected].