OpenGATE / Gate

User-oriented public repository of Gate (macros, examples and user contributions)

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

Awesome list of software that I use to do research in medical imaging.

OSS Implementation of DICOMweb standard

A platform for end-to-end development of machine learning solutions in biomedical imaging

MNE-CPP: A Framework for Electrophysiology

Tensorflow implementation of the V-Net architecture for medical imaging segmentation.

Position based dynamics in Unity

JavaScript library to display interactive medical images including but not limited to DICOM

Molecular simulation in Julia

Bouncing balls simulation using plain JavaScript

Deep Learning Papers on Medical Image Analysis

The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

A 2D Deformable body simulation in Unity using FEM

Research prototyping framework for physics simulation written in C++

DLTK Model Zoo

Awesome GAN for Medical Imaging

Deep Reinforcement Learning (DRL) agents applied to medical images