256 Open source projects that are alternatives of or similar to Gate

User-oriented public repository of Gate (macros, examples and user contributions)

X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2

Deep Learning tools for brain medical images

Discontinuous Galerkin finite element method (DGFEM) for Acoustic Wave Propagation

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

Awesome list of software that I use to do research in medical imaging.

Segment Source Distribution

OSS Implementation of DICOMweb standard

Visualization/Simulation of 2D physics concepts

Keras implementation of the multi-channel cascaded architecture introduced in the paper "Brain Tumor Segmentation with Deep Neural Networks"

Tools for MRI mouse brain morphometry

Atomistic Spin Simulation Framework

A platform for end-to-end development of machine learning solutions in biomedical imaging

A list of Medical imaging datasets.

MNE-CPP: A Framework for Electrophysiology

Cookbook examples for the Insight Toolkit documented with Sphinx

Tensorflow implementation of the V-Net architecture for medical imaging segmentation.

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction

Physics platform is a tool for hardware systems (e.g: raspberryPi 3B ). It retrieves data passing through the network and sends it to a control panel. It works the same way as a botnet by receiving remote commands. (you can imagine that as a black box)

Bouncing balls simulation using plain JavaScript

Deep Learning for Automatic Pneumonia Detection, RSNA challenge

Multi-platform, free open source software for visualization and image computing.

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease

Deep Learning Papers on Medical Image Analysis

DICOM Web Viewer: open source zero footprint medical image viewer.

The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.

End-to-end one-class instance segmentation based on U-Net architecture for Data Science Bowl 2018 in Kaggle

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

Monte Carlo and Molecular Dynamics Simulation Package

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

Classification for covid-19 chest X-ray images using Lightning

A 2D Deformable body simulation in Unity using FEM

Slicer extensions index

DLTK Model Zoo

A 2D Lattice Boltzmann program

Starviewer, a cross-platform open source medical imaging software

Website for NA-MIC Project Weeks

Position based dynamics in Unity

NASOQ:Numerically Accurate Sparsity Oriented QP Solver

Deep Learning Toolkit for Medical Image Analysis

Fourier-Bessel Particle-In-Cell code

Molecular simulation in Julia

Tensorflow implementation of paper: A Hierarchical Approach for Generating Descriptive Image Paragraphs

Comprehensive, GPU accelerated framework for developing universal virtual quantum processors

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

JavaScript library to display interactive medical images including but not limited to DICOM

Framework for medical image segmentation using deep neural networks

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

A graphical 3D simulation of the wave and heat equations

Research prototyping framework for physics simulation written in C++

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

A framework for fast simulation of a generic collider experiment

Awesome GAN for Medical Imaging

Deep Reinforcement Learning (DRL) agents applied to medical images

Spectral, quasi-3D Particle-In-Cell code, for CPU and GPU

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!