Human Neocortical Neurosolver (HNN)
About
The Human Neocortical Neurosolver (HNN) is an open-source neural modeling tool designed to help researchers/clinicians interpret human brain imaging data. HNN presents a convenient GUI to an anatomically and biophysically detailed model of human thalamocortical brain circuits, which makes it easier to generate and evaluate hypotheses on the mechanistic origin of signals measured with MEG/EEG or intracranial ECoG. A unique feature of HNN's model is that it accounts for the biophysics generating the primary electric currents underlying such data, so simulation results are directly comparable to source localized data (nano-Ampere-meters); this enables precise tuning of model parameters to match characteristics of recorded signals.
We are integrating the circuit-level modeling with the minimum-norm-estimate (MNE) source localization software, so researchers can compute MEG/EEG source estimates and test hypotheses on the circuit origin of their data in one software package. Our goal is to design HNN to be useful to researchers with no formal computational neural modeling or coding experience.
For more information visit https://hnn.brown.edu . There, we describe the use of HNN in studying the circuit-level origin of some of the most commonly measured MEG/EEG and ECoG signal: event related potentials (ERPs) and low frequency rhythms (alpha/beta/gamma).
Installation
Please follow the links on our installation page to find instructions for your operating system.
Quickstart
Just do:
$ python hnn.py
to start the HNN graphical user interface
Command-line usage
HNN is not designed to be invoked from the command line, but we have started
hnn-core, a new Python project that can run
simulations with native Python code. Dipole and spiking data are stored in Python objects
and some plotting functions have been implemented. Future versions of this code (HNN) will
import the hnn-core module for running simulations.
Questions
For questions, comments/feedback, or troubleshooting information please contact us at [email protected], and review our user forum at https://www.neuron.yale.edu/phpBB/viewforum.php?f=46 .
References
To cite the HNN software please use the following references:
eLife 2020;9:e51214 DOI: 10.7554/eLife.51214
and
