Top 13 electrophysiology open source projects

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

Modules for processing extracellular electrophysiology data from Neuropixels probes

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

Neuroimaging in Julia

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

Curate, visualize, annotate, and share your behavioral ephys data using Python

C++ lsl library for multi-modal time-synched data transmission over the local network

Python-based module with spike sorter wrappers and a simple API for running them.

Multichannel time series lossless compression in pure Python based on NumPy and zlib

Elephant is the Electrophysiology Analysis Toolkit

A Python-based module for creating flexible and robust spike sorting pipelines.

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

[This repository is archived, will be deprecated after the release of phy 2.0]