All Projects → pievos101 → PopGenome

pievos101 / PopGenome

Licence: other
An Efficient Swiss Army Knife for Population Genomic Analyses in R

Programming Languages

r
7636 projects
c
50402 projects - #5 most used programming language
C++
36643 projects - #6 most used programming language

Projects that are alternatives of or similar to PopGenome

GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
Stars: ✭ 33 (+153.85%)
Mutual labels:  snps
arv
A fast 23andMe DNA parser and inferrer for Python
Stars: ✭ 98 (+653.85%)
Mutual labels:  snps
PopDel
Population-wide Deletion Calling
Stars: ✭ 31 (+138.46%)
Mutual labels:  population-genomics
hess
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
Stars: ✭ 27 (+107.69%)
Mutual labels:  snps
impute-me
This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
Stars: ✭ 96 (+638.46%)
Mutual labels:  snps
rsnps
Wrapper to a number of SNP web APIs
Stars: ✭ 44 (+238.46%)
Mutual labels:  snps
dna-traits
A fast 23andMe genome text file parser, now superseded by arv
Stars: ✭ 64 (+392.31%)
Mutual labels:  snps
PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (+30.77%)
Mutual labels:  snps
snps
tools for reading, writing, merging, and remapping SNPs
Stars: ✭ 57 (+338.46%)
Mutual labels:  snps
vargeno
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Stars: ✭ 18 (+38.46%)
Mutual labels:  snps
ngsLD
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
Stars: ✭ 25 (+92.31%)
Mutual labels:  population-genomics
assignPOP
Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.
Stars: ✭ 16 (+23.08%)
Mutual labels:  population-genomics
mccortex
De novo genome assembly and multisample variant calling
Stars: ✭ 105 (+707.69%)
Mutual labels:  genome-analysis
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Stars: ✭ 25 (+92.31%)
Mutual labels:  genome-analysis
TeamTeri
Genomics using open source tools, running on GCP or AWS
Stars: ✭ 30 (+130.77%)
Mutual labels:  genome-analysis
bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
Stars: ✭ 51 (+292.31%)
Mutual labels:  genome-analysis
Winnowmap
Long read / genome alignment software
Stars: ✭ 151 (+1061.54%)
Mutual labels:  genome-analysis
Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].