GeneticVariation.jlDatastructures and algorithms for working with genetic variation
Stars: ✭ 33 (+153.85%)
Mutual labels: snps
arvA fast 23andMe DNA parser and inferrer for Python
Stars: ✭ 98 (+653.85%)
Mutual labels: snps
PopDelPopulation-wide Deletion Calling
Stars: ✭ 31 (+138.46%)
Mutual labels: population-genomics
hessEstimate local SNP heritability and genetic covariance from GWAS summary association statistics.
Stars: ✭ 27 (+107.69%)
Mutual labels: snps
impute-meThis is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
Stars: ✭ 96 (+638.46%)
Mutual labels: snps
rsnpsWrapper to a number of SNP web APIs
Stars: ✭ 44 (+238.46%)
Mutual labels: snps
dna-traitsA fast 23andMe genome text file parser, now superseded by arv
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Mutual labels: snps
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
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Mutual labels: snps
snpstools for reading, writing, merging, and remapping SNPs
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Mutual labels: snps
vargenoTowards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
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Mutual labels: snps
ngsLDCalculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
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Mutual labels: population-genomics
assignPOPPopulation Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.
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Mutual labels: population-genomics
mccortexDe novo genome assembly and multisample variant calling
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Mutual labels: genome-analysis
EarlGreyEarl Grey: A fully automated TE curation and annotation pipeline
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Mutual labels: genome-analysis
TeamTeriGenomics using open source tools, running on GCP or AWS
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Mutual labels: genome-analysis
bacannotGeneric but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
Stars: ✭ 51 (+292.31%)
Mutual labels: genome-analysis
WinnowmapLong read / genome alignment software
Stars: ✭ 151 (+1061.54%)
Mutual labels: genome-analysis