GitPlanet

Cheap and reliable Node.js hosting starts at $3/month, and $1/month static HTML hosting

Created with love in Canada, visit hostnodejs.com today

Feel like to post an Ad? Learn Details
All Projects → PingjunChen → pyslide

PingjunChen / pyslide

Licence: MIT License
Digital Pathology Whole Slide Image Analysis Toolbox

Programming Languages

python
139335 projects - #7 most used programming language
TeX
3793 projects

Labels

deep-learningimage-analysispathologywhole-slide-imagingcomputational-pathology

Projects that are alternatives of or similar to pyslide

Cytomine-core
Cytomine-Core is the main web server implementing the Cytomine API
Stars: ✭ 70 (+84.21%)
Mutual labels:  whole-slide-imaging, computational-pathology
matImage
Image Processing library for Matlab
Stars: ✭ 75 (+97.37%)
Mutual labels:  image-analysis
qupath-chcapi-extension
Extension to QuPath application adding support for reading from Google Cloud Healthcare API.
Stars: ✭ 13 (-65.79%)
Mutual labels:  whole-slide-imaging
PSCognitiveService
Powershell module to access Microsoft Azure Machine learning RESTful API's or Microsoft cognitive services
Stars: ✭ 46 (+21.05%)
Mutual labels:  image-analysis
u-shape3D
Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
Stars: ✭ 20 (-47.37%)
Mutual labels:  image-analysis
CRC4Docker
Python scripts for the textbook "Image Analysis, Classification and Change Detection in Remote Sensing, Fourth Revised Edition"
Stars: ✭ 84 (+121.05%)
Mutual labels:  image-analysis
FAST-Pathology
⚡ Open-source software for deep learning-based digital pathology
Stars: ✭ 54 (+42.11%)
Mutual labels:  computational-pathology
bluelight
a browser-based DICOM viewer
Stars: ✭ 35 (-7.89%)
Mutual labels:  whole-slide-imaging
noflo-image
Image processing components for NoFlo.
Stars: ✭ 14 (-63.16%)
Mutual labels:  image-analysis
MomentToolbox
Matlab code for the paper "A survey of orthogonal moments for image representation: Theory, implementation, and evaluation"
Stars: ✭ 13 (-65.79%)
Mutual labels:  image-analysis
imei
IMEI - ImageMagick Easy Install
Stars: ✭ 126 (+231.58%)
Mutual labels:  image-analysis
Scripts
🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
Stars: ✭ 18 (-52.63%)
Mutual labels:  image-analysis
MPoL
A flexible Python platform for Regularized Maximum Likelihood imaging
Stars: ✭ 21 (-44.74%)
Mutual labels:  image-analysis
pigallery
PiGallery: AI-powered Self-hosted Secure Multi-user Image Gallery and Detailed Image analysis using Machine Learning, EXIF Parsing and Geo Tagging
Stars: ✭ 35 (-7.89%)
Mutual labels:  image-analysis
phoenix
phoenix is a small command line image forensics tool
Stars: ✭ 39 (+2.63%)
Mutual labels:  image-analysis
ForensicsTools
A list of free and open forensics analysis tools and other resources
Stars: ✭ 392 (+931.58%)
Mutual labels:  image-analysis
hsn v1
HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)
Stars: ✭ 65 (+71.05%)
Mutual labels:  computational-pathology
python-bioimage-analysis-tutorial
The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!
Stars: ✭ 41 (+7.89%)
Mutual labels:  image-analysis
SlideSeg
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
Stars: ✭ 71 (+86.84%)
Mutual labels:  whole-slide-imaging
objectfit-focalpoint
Generate the object-position value to capture an image's focal point given a custom aspect-ratio.
Stars: ✭ 14 (-63.16%)
Mutual labels:  image-analysis
View All Similar Projects ➔

pyslide - Python whole slide image analysis toolkit

Codacy Badge CircleCI Documentation Status codecov Downloads

pyslide-banner

Please consider star this repo if you find pyslide to be helpful for your work.

Installation

To install pyslide, apt dependences before pip:

sudo apt-get install openslide-tools
sudo apt-get install libgeos-dev
pip install -r requirements.txt
pip install pyslide==0.4.5

Usage

Documentation

Hosted in https://pyslide.readthedocs.io, powered by readthedocs and Sphinx.

License

pyslide is free software made available under the MIT License. For details see the LICENSE file.

Contributors

See the AUTHORS.md file for a complete list of contributors to the project.

Contributing

pyslide is an open source project and all whole slide image analysis related functions are very welcome to contribute. An easy way to get started is by suggesting a new enhancement on the Issues. If you have found a bug, then either report this through Issues, or even better, make a fork of the repository, fix the bug and then create a Pull Request to get the fix into the master branch.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].