109 Open source projects that are alternatives of or similar to pyslide

Cytomine-Core is the main web server implementing the Cytomine API

Lattice light-sheet post-processing utility.

I/O operations for OME-TIFF files in Julia

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

An open source online platform for collaborative image labeling of almost everything

Extension to QuPath application adding support for reading from Google Cloud Healthcare API.

This repository explores the variety of techniques commonly used to analyze and interpret images. It also describes challenging real-world applications where vision is being successfully used, both for specialized applications such as medical imaging, and for fun, consumer-level tasks such as image editing and stitching, which students can apply…

Powershell module to access Microsoft Azure Machine learning RESTful API's or Microsoft cognitive services

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

AI-based pathology predicts origins for cancers of unknown primary - Nature

Interactive Image similarity and Visual Search and Retrieval application

GARI (Genetic Algorithm for Reproducing Images) reproduces a single image using Genetic Algorithm (GA) by evolving pixel values.

Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.

Spatial Single Cell Analysis in Python

Python scripts for the textbook "Image Analysis, Classification and Change Detection in Remote Sensing, Fourth Revised Edition"

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

⚡ Open-source software for deep learning-based digital pathology

ggimg: Graphics Layers for Plotting Image Data with ggplot2

Image Processing library for Matlab

3D Slicer Module for connecting to model repository and use models for image analysis.

An R package for conducting co-localization analysis. Edit

Collection of mathematical morphology methods and plugins for ImageJ

IMEI - ImageMagick Easy Install

GUI for Image processing with Matlab

A faster re-implementation of the FAST-9 algorithm (C++, with C bindings available)

No description or website provided.

MAINTAINER WANTED -- Decode embedded EXIF meta data from image files written in Pure Golang

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

A curated list of awesome cytodata resources

A flexible Python platform for Regularized Maximum Likelihood imaging

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

PiGallery: AI-powered Self-hosted Secure Multi-user Image Gallery and Detailed Image analysis using Machine Learning, EXIF Parsing and Geo Tagging

Cython bindings for fpzip, a floating point image compression algorithm.

phoenix is a small command line image forensics tool

A unified framework for example-based texture synthesis, developed alongside my master's thesis.

A list of free and open forensics analysis tools and other resources

Find the type or size of an image

The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!

Library that helps to implement the QuadTree in android, by using splitting images

🎇 Quickly search over billions of images

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

a browser-based DICOM viewer

No description or website provided.

Automated 3D cell detection and registration of whole-brain images

👁️ An authorial set of fundamental Python recipes on Computer Vision and Digital Image Processing.

Matlab code for the paper "A survey of orthogonal moments for image representation: Theory, implementation, and evaluation"

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

A python library for advanced lattice light-sheet image analysis

CoRA Docs

Image processing components for NoFlo.

(Latest semester at https://github.com/kmader/Quantitative-Big-Imaging-2019) The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2018

Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.

HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)

Plant Disease Identification Using Convulutional Neural Network

Cookbook examples for the Insight Toolkit documented with Sphinx

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

Generate the object-position value to capture an image's focal point given a custom aspect-ratio.

A multipurpose tool for medical physics.

A machine learning exercise, using KNN to classify deforested areas

Speed up coding/extending image analysis in Python.