GitPlanet

Cheap and reliable Node.js hosting starts at $3/month, and $1/month static HTML hosting

Created with love in Canada, visit hostnodejs.com today

Feel like to post an Ad? Learn Details
All Projects → YuLab-SMU → ReactomePA

YuLab-SMU / ReactomePA

Licence: other
Reactome Pathway Analysis

Programming Languages

r
7636 projects
Makefile
30231 projects

Labels

enrichment-analysisreactome-pathway-analysisreactomepa

Projects that are alternatives of or similar to ReactomePA

rss
Regression with Summary Statistics.
Stars: ✭ 42 (+55.56%)
Mutual labels:  enrichment-analysis
pygna
A Python package for gene network analysis
Stars: ✭ 25 (-7.41%)
Mutual labels:  enrichment-analysis
geneSCF inactive
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Stars: ✭ 21 (-22.22%)
Mutual labels:  enrichment-analysis
enrichplot
Visualization of Functional Enrichment Result
Stars: ✭ 142 (+425.93%)
Mutual labels:  enrichment-analysis
rtfbs db
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
Stars: ✭ 23 (-14.81%)
Mutual labels:  enrichment-analysis
DOSE
😷 Disease Ontology Semantic and Enrichment analysis
Stars: ✭ 86 (+218.52%)
Mutual labels:  enrichment-analysis

ReactomePA: Reactome Pathway Analysis

Project Status: Active - The project has reached a stable, usable state and is being actively developed. codecov Bioc

platform Last-changedate Build Status Linux/Mac Travis Build Status AppVeyor Build Status

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

For details, please visit https://yulab-smu.top/biomedical-knowledge-mining-book/.

✍️ Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

https://yulab-smu.top

Twitter saythanks

Please cite the following article when using ReactomePA:

G Yu, QY He*. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems 2016, 12(2):477-479.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].