hotsubCommand line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
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Mutual labels: bioinformatics, cwl, wdl-workflow, cwl-workflow
workflowsBioinformatics workflows developed for and used on the St. Jude Cloud project.
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Mutual labels: cwl, wdl-workflow, cwl-workflow
pyrpipeReproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
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Mutual labels: bioinformatics, conda
snakefmtThe uncompromising Snakemake code formatter
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Mutual labels: bioinformatics, snakemake
conda-env-builderBuild and maintain multiple custom conda environments all in once place.
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Mutual labels: bioinformatics, conda
wdl2cwl[Experimental] Workflow Definition Language (WDL) to CWL
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Mutual labels: cwl, wdl-workflow
gnparserGNparser normalises scientific names and extracts their semantic elements.
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Mutual labels: bioinformatics
siriusSIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
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Mutual labels: bioinformatics
unimapA EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
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Mutual labels: bioinformatics
gee🏵 Gee is tool of stdin to each files and stdout. It is similar to the tee command, but there are more functions for convenience. In addition, it was written as go
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Mutual labels: pipelines
admixrAn R package for reproducible and automated ADMIXTOOLS analyses
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Mutual labels: bioinformatics
GRAFIMOGRAph-based Finding of Individual Motif Occurrences
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Mutual labels: bioinformatics
sample-sheetA permissively licensed library designed to replace Illumina's Experiment Manager
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Mutual labels: bioinformatics
rkmhClassify sequencing reads using MinHash.
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Mutual labels: bioinformatics
TeamTeriGenomics using open source tools, running on GCP or AWS
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Mutual labels: bioinformatics
Binning refinerImproving genome bins through the combination of different binning programs
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Mutual labels: bioinformatics
telegram-stepfunctions-botServerless Telegram bot made on 4 AWS Lambda chained by AWS Step Functions. All of this written on Serverless Framework using plugins.
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Mutual labels: aws-step-function
awesome-phagesA curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
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Mutual labels: bioinformatics
codon-usage-tables📊 Codon usage tables in code-friendly format + Python bindings
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Mutual labels: bioinformatics
dysgudysgu-SV is a collection of tools for calling structural variants using short or long reads
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Mutual labels: bioinformatics