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Top 6 tcga open source projects

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

✭ 47

typescript CSS javascript graphviz bioinformatics systems-biology tcga cancer-genomics pathways network-visualization pathway-analysis cancer-pathways

GenomicDataCommons

Provide R access to the NCI Genomic Data Commons portal.

✭ 64

r data-science bioinformatics genomics cancer tcga api-client core-services bioconductor vignette nci

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

✭ 13

Jupyter Notebook genomics cancer tcga alternative-splicing manuscript-figures

Interactive R package to quantify, analyse and visualise alternative splicing

✭ 26

r javascript tcga gene-expression bioconductor alternative-splicing gtex survival splicing-quantification data-analyses differential-splicing-analysis rna-seq-data sra differential-gene-expression vast-tools recount2

MultiAssayExperiment

Bioconductor package for management of multi-assay data

✭ 57

r genomics tcga bioconductor nci-itcr bioconductor-package

TCGA data acquisition and processing for Project Cognoma

✭ 17

Jupyter Notebook python shell cancer tcga dataphilly xena xena-browser mutation data-acquisition gene-expression

1-6 of 6 tcga projects