624 Open source projects that are alternatives of or similar to Afterqc

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Salentin et al. (2015), https://www.doi.org/10.1093/nar/gkv315

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Phylogenetic trees in Julia

Global Biotic Interactions provides access to existing species interaction datasets

Bioinformatics containers

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

GCP Essentials for Bioinformatics Researchers

micca - MICrobial Community Analysis

Analytical Models of the Performance of C-V2X Mode 4 Vehicular Communications

BACNET is a Java based platform to develop website for multi-omics analysis

Cute Error Pages for your nginx web server

Add inline code editing to your ignition page

Create regional association plots from GWAS or meta-analysis

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Race and ethnicity Imputation from Disease history with Deep LEarning

Curated list of bioinformatics formats and publications

Exact Tandem Repeat Finder (not a TRF replacement)

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

ECG classification programs based on ML/DL methods

Earl Grey: A fully automated TE curation and annotation pipeline

Scripts showcasing filtering techniques applied to point cloud data.

A fast 23andMe genome text file parser, now superseded by arv

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Show some ❤️ to Node.js process errors

A Practical and Efficient NCBI Taxonomy Toolkit

A react native module that lets you to register a global error handler that can capture fatal/non fatal uncaught exceptions.

A cross-platform command-line tool for executing jobs in parallel

Predict plasmids from uncorrected long read data

Comprehensive toolkit for generating various numerical features of protein sequences

Examples using Clustergrammer2 to explore high-dimensional datasets.

A robust and fast clustering method for amplicon-based studies

VirNet: A deep attention model for viral reads identification

Tiny library to parse error stack traces

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Code examples of fast and simple k-mer counters for tutorial purposes

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

Randomly subsample sequencing reads to a specified coverage

A sortable/searchable table addon for ember cli

Drop-in replacement for the standard library errors package and github.com/pkg/errors

Mapping-Assisted Targeted-Assembly for Metagenomics

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Automatic panic monitoring for Go and Go web frameworks, like negroni, gin, and revel

A library to build and execute typed scientific workflows

A lightweight immune repertoire browser

a collection of small and standalone utilities for image processing, written in C

Double Sided Assembly Line Balancing with Genetic Algorithm (C#)

Tools for working with SAM/BAM data

React rerelease of MSAViewer

Discovering known and novel miRNAs from small RNA sequencing data

The next version of bwa-mem

Python library to facilitate genome assembly, annotation, and comparative genomics

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

SortMeRNA: next-generation sequence filtering and alignment tool

compacted de Bruijn graph construction in low memory

A modern genome browser built with JavaScript and HTML5.

Development-only error handler middleware

Characterization of Germline variants

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing