406 Open source projects that are alternatives of or similar to argparse2tool

Bystro genetic analysis (annotation, filtering, statistics)

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(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

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Highly customizable, ambiguity-aware dotplots for visual sequence analyses

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React rerelease of MSAViewer

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

Stacked Denoising AutoEncoder based on TensorFlow

My own tools code for NGS data analysis (Next Generation Sequencing)

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

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Fast and flexible ORF finder

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An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

Fast alignment and preprocessing of chromatin profiles

Method to optimally select samples for validation and resequencing

exploratory and interactive microbiome analyses based on heatmaps

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Compute N50/NG50 and auN/auNG

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.

A computational library for learning and evaluating biological knowledge graph embeddings

WebGL Heatmap Viewer for Big Data and Bioinformatics

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Version 5 of the CAFE phylogenetics software

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Feature extraction algorithm for genomic data

Mapping-Assisted Targeted-Assembly for Metagenomics

🎯 Human transcription factor target genes.

Provide R access to the NCI Genomic Data Commons portal.

Ploidy agnostic phasing pipeline and algorithm

A curated list of awesome bioinformatics software.

Useful bioinformatic scripts

🚦 Run Picard on BAM files and collate 90 metrics into one file.

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Genotyping of segregating mobile elements insertions

GWAS summary statistics files QC tool